William, a lifelong Villa fan, visited United's training ground earlier this year but Villa released a baby's kit personalised with "HRH 1".
Bolt, who charmed Britons at the weekend during the Anniversary Games, is however keen for the Prince and wife Kate Middleton to raise a Red.
The Birmingham Mail report Bolt as saying: “The British royal family are great people - and I’ve been fortunate enough to meet some of them.
“I want to give all my best to the Prince and Duchess on their firstborn.
“I just hope he doesn’t follow in his daddy’s footsteps and become an Aston Villa fan. It isn’t fair to put a child through that - especially not a prince.”
The Olympic 100 and 200m champion added: “When the prince is old enough, I’d love to take him to Old Trafford.
“It’s only fair he gets to support a winning team.”