"I have to take responsibility for the fact that I worked with them both. I can’t turn back the clock," the actor said.
The BlacKkKlansman director apologised on Twitter after saying Allen was "going through it right now" in an interview.
The two previously collaborated on the axed Amazon film A Rainy Day In New York.
The Marriage Story actress has sparked controversy on multiple occasions in the last few months, which she addressed in a new Vanity Fair interview.
"He maintains his innocence, and I believe him," the Black Widow actress said in a new interview.
The director claims they have dropped the film "without any legal basis".
'I've always had a wonderful record with actresses.'
Accusations made by his daughter have resurfaced in the wake of the 'Time's Up' movement.
Woody Allen’s Daughter Dylan Farrow Gives First TV Interview To Discuss Sexual Abuse Claims Against Father
'Why shouldn't I want to bring him down?'
'I don’t want to profit from my work on the film.'